6P1D image
Deposition Date 2019-05-19
Release Date 2019-12-18
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6P1D
Title:
Crystal structure of EGFR with mutant-selective dihydrodibenzodiazepinone allosteric inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Epidermal growth factor receptor
Gene (Uniprot):EGFR
Chain IDs:A (auth: D), B (auth: A), C (auth: B), D (auth: C)
Chain Length:327
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Discovery and Optimization of Dibenzodiazepinones as Allosteric Mutant-Selective EGFR Inhibitors.
Acs Med.Chem.Lett. 10 1549 1553 (2019)
PMID: 31749909 DOI: 10.1021/acsmedchemlett.9b00381

Abstact

Allosteric kinase inhibitors represent a promising new therapeutic strategy for targeting kinases harboring oncogenic driver mutations in cancers. Here, we report the discovery, optimization, and structural characterization of allosteric mutant-selective EGFR inhibitors comprising a 5,10-dihydro-11H-dibenzo[b,e][1,4]diazepin-11-one scaffold. Our structure-based medicinal chemistry effort yielded an inhibitor (3) of the EGFR(L858R/T790M) and EGFR(L858R/T790M/C797S) mutants with an IC50 of ∼10 nM and high selectivity, as assessed by kinome profiling. Further efforts to develop allosteric dibenzodiazepinone inhibitors may serve as the basis for new therapeutic options for targeting drug-resistant EGFR mutations.

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Primary Citation of related structures