6OYA image
Deposition Date 2019-05-14
Release Date 2019-07-24
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6OYA
Title:
Structure of the Rhodopsin-Transducin-Nanobody Complex
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Lama glama (Taxon ID: 9844)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Gt-alpha/Gi1-alpha chimera
Gene (Uniprot):GNAT1
Chain IDs:A
Chain Length:359
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Gene (Uniprot):GNB1
Chain IDs:B
Chain Length:340
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(T) subunit gamma-T1
Gene (Uniprot):GNGT1
Chain IDs:C (auth: G)
Chain Length:81
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Camelid antibody VHH fragment
Chain IDs:D (auth: N)
Chain Length:138
Number of Molecules:1
Biological Source:Lama glama
Polymer Type:polypeptide(L)
Molecule:Rhodopsin
Gene (Uniprot):RHO
Chain IDs:E (auth: R)
Chain Length:348
Number of Molecules:1
Biological Source:Bos taurus
Ligand Molecules
Primary Citation
Structures of the Rhodopsin-Transducin Complex: Insights into G-Protein Activation.
Mol.Cell 75 781 ? (2019)
PMID: 31300275 DOI: 10.1016/j.molcel.2019.06.007

Abstact

Rhodopsin (Rho), a prototypical G-protein-coupled receptor (GPCR) in vertebrate vision, activates the G-protein transducin (GT) by catalyzing GDP-GTP exchange on its α subunit (GαT). To elucidate the determinants of GT coupling and activation, we obtained cryo-EM structures of a fully functional, light-activated Rho-GT complex in the presence and absence of a G-protein-stabilizing nanobody. The structures illustrate how GT overcomes its low basal activity by engaging activated Rho in a conformation distinct from other GPCR-G-protein complexes. Moreover, the nanobody-free structures reveal native conformations of G-protein components and capture three distinct conformers showing the GαT helical domain (αHD) contacting the Gβγ subunits. These findings uncover the molecular underpinnings of G-protein activation by visual rhodopsin and shed new light on the role played by Gβγ during receptor-catalyzed nucleotide exchange.

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Primary Citation of related structures