6OWT image
Entry Detail
PDB ID:
6OWT
EMDB ID:
Title:
Structure of SIVsmm Nef and SMM tetherin bound to the clathrin adaptor AP-2 complex
Biological Source:
PDB Version:
Deposition Date:
2019-05-10
Release Date:
2019-09-25
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:AP-2 complex subunit alpha
Chain IDs:A
Chain Length:939
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Description:AP-2 complex subunit beta
Chain IDs:B
Chain Length:591
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Description:Adaptor protein complex AP-2, mu1
Chain IDs:C (auth: M)
Chain Length:141
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:AP-2 complex subunit sigma
Mutations:N97C, C99S
Chain IDs:F (auth: S)
Chain Length:142
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Description:Tetherin,Protein Nef
Mutations:C55A
Chain IDs:D (auth: T), E (auth: N)
Chain Length:275
Number of Molecules:2
Biological Source:Cercocebus atys, Simian immunodeficiency virus
Ligand Molecules
Primary Citation
Structural Basis for Tetherin Antagonism as a Barrier to Zoonotic Lentiviral Transmission.
Cell Host Microbe 26 359 368.e8 (2019)
PMID: 31447307 DOI: 10.1016/j.chom.2019.08.002

Abstact

Tetherin is a host defense factor that physically prevents virion release from the plasma membrane. The Nef accessory protein of simian immunodeficiency virus (SIV) engages the clathrin adaptor AP-2 to downregulate tetherin via its DIWK motif. As human tetherin lacks DIWK, antagonism of tetherin by Nef is a barrier to simian-human transmission of non-human primate lentiviruses. To determine the molecular basis for tetherin counteraction, we reconstituted the AP-2 complex with a simian tetherin and SIV Nef and determined its structure by cryoelectron microscopy (cryo-EM). Nef refolds the first α-helix of the β2 subunit of AP-2 to a β hairpin, creating a binding site for the DIWK sequence. The tetherin binding site in Nef is distinct from those of most other Nef substrates, including MHC class I, CD3, and CD4 but overlaps with the site for the restriction factor SERINC5. This structure explains the dependence of SIVs on tetherin DIWK and consequent barrier to human transmission.

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Primary Citation of related structures