6OTT image
Deposition Date 2019-05-03
Release Date 2019-11-06
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6OTT
Title:
Structure of PurF in complex with ppApp
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Amidophosphoribosyltransferase, PurF
Gene (Uniprot):purF
Chain IDs:A, B
Chain Length:504
Number of Molecules:2
Biological Source:Escherichia coli (strain K12)
Primary Citation
An interbacterial toxin inhibits target cell growth by synthesizing (p)ppApp.
Nature 575 674 678 (2019)
PMID: 31695193 DOI: 10.1038/s41586-019-1735-9

Abstact

Bacteria have evolved sophisticated mechanisms to inhibit the growth of competitors1. One such mechanism involves type VI secretion systems, which bacteria can use to inject antibacterial toxins directly into neighbouring cells. Many of these toxins target the integrity of the cell envelope, but the full range of growth inhibitory mechanisms remains unknown2. Here we identify a type VI secretion effector, Tas1, in the opportunistic pathogen Pseudomonas aeruginosa. The crystal structure of Tas1 shows that it is similar to enzymes that synthesize (p)ppGpp, a broadly conserved signalling molecule in bacteria that modulates cell growth rate, particularly in response to nutritional stress3. However, Tas1 does not synthesize (p)ppGpp; instead, it pyrophosphorylates adenosine nucleotides to produce (p)ppApp at rates of nearly 180,000 molecules per minute. Consequently, the delivery of Tas1 into competitor cells drives rapid accumulation of (p)ppApp, depletion of ATP, and widespread dysregulation of essential metabolic pathways, thereby resulting in target cell death. Our findings reveal a previously undescribed mechanism for interbacterial antagonism and demonstrate a physiological role for the metabolite (p)ppApp in bacteria.

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Primary Citation of related structures