6OTC image
Entry Detail
PDB ID:
6OTC
Title:
Synthetic Fab bound to Marburg virus VP35 interferon inhibitory domain
Biological Source:
PDB Version:
Deposition Date:
2019-05-02
Release Date:
2019-06-05
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Polymerase cofactor VP35
Chain IDs:A
Chain Length:129
Number of Molecules:1
Biological Source:Lake Victoria marburgvirus (strain Popp-67)
Polymer Type:polypeptide(L)
Description:sFab H3 heavy chain
Chain IDs:B (auth: H)
Chain Length:240
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:sFab H3 light chain
Chain IDs:C (auth: L)
Chain Length:232
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Inhibition of Marburg Virus RNA Synthesis by a Synthetic Anti-VP35 Antibody.
Acs Infect Dis. 5 1385 1396 (2019)
PMID: 31120240 DOI: 10.1021/acsinfecdis.9b00091

Abstact

Marburg virus causes sporadic outbreaks of severe hemorrhagic fever with high case fatality rates. Approved, effective, and safe therapeutic or prophylactic countermeasures are lacking. To address this, we used phage display to engineer a synthetic antibody, sFab H3, which binds the Marburg virus VP35 protein (mVP35). mVP35 is a critical cofactor of the viral replication complex and a viral immune antagonist. sFab H3 displayed high specificity for mVP35 and not for the closely related Ebola virus VP35. sFab H3 inhibited viral-RNA synthesis in a minigenome assay, suggesting its potential use as an antiviral. We characterized sFab H3 by a combination of biophysical and biochemical methods, and a crystal structure of the complex solved to 1.7 Å resolution defined the molecular interface between the sFab H3 and mVP35 interferon inhibitory domain. Our study identifies mVP35 as a therapeutic target using an approach that provides a framework for generating engineered Fabs targeting other viral proteins.

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Primary Citation of related structures