6ORM image
Deposition Date 2019-04-30
Release Date 2020-05-06
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6ORM
Keywords:
Title:
Crystal Structure of Peruvianin-I (Cysteine peptidase from Thevetia peruviana latex)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Peruvianin-I
Chain IDs:A, B, C
Chain Length:202
Number of Molecules:3
Biological Source:Thevetia peruviana
Primary Citation
Crystal structure and specific location of a germin-like protein with proteolytic activity from Thevetia peruviana.
Plant Sci. 298 110590 110590 (2020)
PMID: 32771148 DOI: 10.1016/j.plantsci.2020.110590

Abstact

Peruvianin-I is a cysteine peptidase (EC 3.4.22) purified from Thevetia peruviana. Previous studies have shown that it is the only germin-like protein (GLP) with proteolytic activity described so far. In this work, the X-ray crystal structure of peruvianin-I was determined to a resolution of 2.15 Å (PDB accession number: 6ORM) and its specific location was evaluated by different assays. Its overall structure shows an arrangement composed of a homohexamer (a trimer of dimers) where each monomer exhibits a typical β-barrel fold and two glycosylation sites (Asn55 and Asn144). Analysis of its active site confirmed the absence of essential amino acids for typical oxalate oxidase activity of GLPs. Details of the active site and molecular docking results, using a specific cysteine peptidase inhibitor (iodoacetamide), were used to discuss a plausible mechanism for proteolytic activity of peruvianin-I. Histological analyses showed that T. peruviana has articulated anastomosing laticifers, i.e., rows of cells which merge to form continuous tubes throughout its green organs. Moreover, peruvianin-I was detected exclusively in the latex. Because latex peptidases have been described as defensive molecules against insects, we hypothesize that peruvianin-I contributes to protect T. peruviana plants against herbivory.

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