6OMQ image
Deposition Date 2019-04-19
Release Date 2019-07-24
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6OMQ
Keywords:
Title:
Crystal structure of PtmU3 complexed with PTM substrate
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.86 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PtmU3
Chain IDs:A, B
Chain Length:356
Number of Molecules:2
Biological Source:Streptomyces platensis
Primary Citation
Characterization and Crystal Structure of a Nonheme Diiron Monooxygenase Involved in Platensimycin and Platencin Biosynthesis.
J.Am.Chem.Soc. 141 12406 12412 (2019)
PMID: 31291107 DOI: 10.1021/jacs.9b06183

Abstact

Nonheme diiron monooxygenases make up a rapidly growing family of oxygenases that are rarely identified in secondary metabolism. Herein, we report the in vivo, in vitro, and structural characterizations of a nonheme diiron monooxygenase, PtmU3, that installs a C-5 β-hydroxyl group in the unified biosynthesis of platensimycin and platencin, two highly functionalized diterpenoids that act as potent and selective inhibitors of bacterial and mammalian fatty acid synthases. This hydroxylation sets the stage for the subsequent A-ring cleavage step key to the unique diterpene-derived scaffolds of platensimycin and platencin. PtmU3 adopts an unprecedented triosephosphate isomerase (TIM) barrel structural fold for this class of enzymes and possesses a noncanonical diiron active site architecture with a saturated six-coordinate iron center lacking a μ-oxo bridge. This study reveals the first member of a previously unidentified superfamily of TIM-barrel-fold enzymes for metal-dependent dioxygen activation, with the majority predicted to act on CoA-linked substrates, thus expanding our knowledge of nature's repertoire of nonheme diiron monooxygenases and TIM-barrel-fold enzymes.

Legend

Protein

Chemical

Disease

Primary Citation of related structures