6OMM image
Entry Detail
PDB ID:
6OMM
EMDB ID:
Title:
Cryo-EM structure of formyl peptide receptor 2/lipoxin A4 receptor in complex with Gi
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2019-04-19
Release Date:
2020-02-26
Method Details:
Experimental Method:
Resolution:
3.17 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(i) subunit alpha-1
Mutations:G203A, A326S, D328E
Chain IDs:C (auth: A)
Chain Length:353
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Mutations:Q6E, E130Q, N237D
Chain IDs:D (auth: B)
Chain Length:353
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Mutations:E17Q, E58Q
Chain IDs:E (auth: C)
Chain Length:67
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:scFv16
Chain IDs:F (auth: E)
Chain Length:247
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:Peptide agonist
Chain IDs:B (auth: L)
Chain Length:6
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:N-formyl peptide receptor 2
Chain IDs:A (auth: R)
Chain Length:363
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure of formylpeptide receptor 2-Gicomplex reveals insights into ligand recognition and signaling.
Nat Commun 11 885 885 (2020)
PMID: 32060286 DOI: 10.1038/s41467-020-14728-9

Abstact

Formylpeptide receptors (FPRs) as G protein-coupled receptors (GPCRs) can recognize formylpeptides derived from pathogens or host cells to function in host defense and cell clearance. In addition, FPRs, especially FPR2, can also recognize other ligands with a large chemical diversity generated at different stages of inflammation to either promote or resolve inflammation in order to maintain a balanced inflammatory response. The mechanism underlying promiscuous ligand recognition and activation of FPRs is not clear. Here we report a cryo-EM structure of FPR2-Gi signaling complex with a peptide agonist. The structure reveals a widely open extracellular region with an amphiphilic environment for ligand binding. Together with computational docking and simulation, the structure suggests a molecular basis for the recognition of formylpeptides and a potential mechanism of receptor activation, and reveals conserved and divergent features in Gi coupling. Our results provide a basis for understanding the molecular mechanism of the functional promiscuity of FPRs.

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