6OM4 image
Entry Detail
PDB ID:
6OM4
Title:
The structure of Microcin C7 biosynthetic enzyme MccB in complex with N-formylated MccA
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-04-18
Release Date:
2019-05-22
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:MccB protein
Chain IDs:A, B
Chain Length:348
Number of Molecules:2
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:Microcin C7
Chain IDs:C, D
Chain Length:7
Number of Molecules:2
Biological Source:Escherichia coli
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME C MET modified residue
Primary Citation
Biosynthesis of the RiPP trojan horse nucleotide antibiotic microcin C is directed by theN-formyl of the peptide precursor.
Chem Sci 10 2391 2395 (2019)
PMID: 30881667 DOI: 10.1039/c8sc03173h

Abstact

Microcin C7 (McC) is a peptide antibiotic modified by a linkage of the terminal isoAsn amide to AMP via a phosphoramidate bond. Post-translational modification on this ribosomally produced heptapeptide precursor is carried out by MccB, which consumes two equivalents of ATP to generate the N-P linkage. We demonstrate that MccB only efficiently processes the precursor heptapeptide that retains the N-formylated initiator Met (fMet). Binding studies and kinetic measurements evidence the role of the N-formyl moiety. Structural data show that the N-formyl peptide binding results in an ordering of residues in the MccB "crossover loop", which dictates specificity in homologous ubiquitin activating enzymes. The N-formyl peptide exhibits substrate inhibition, and cannot be displaced from MccB by the desformyl counterpart. Such substrate inhibition may be a strategy to avert unwanted McC buildup and avert toxicity in the cytoplasm of producing organisms.

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Primary Citation of related structures