6OM3 image
Deposition Date 2019-04-18
Release Date 2019-07-10
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6OM3
Title:
Crystal structure of the Orc1 BAH domain in complex with a nucleosome core particle
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Mutations:G102A
Chain IDs:A, E, M, Q
Chain Length:135
Number of Molecules:4
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:B, F, N, R
Chain Length:103
Number of Molecules:4
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Histone H2A
Mutations:G99R, S123A
Chain IDs:C, G, O, S
Chain Length:130
Number of Molecules:4
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Mutations:S32T
Chain IDs:D, H, P, T
Chain Length:126
Number of Molecules:4
Biological Source:Xenopus laevis
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (146-MER)
Chain IDs:I, U
Chain Length:146
Number of Molecules:2
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (147-MER)
Chain IDs:J, V
Chain Length:147
Number of Molecules:2
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 1
Gene (Uniprot):ORC1
Mutations:L79I
Chain IDs:K, L, W, X
Chain Length:224
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Ligand Molecules
Primary Citation
Structure and function of the Orc1 BAH-nucleosome complex.
Nat Commun 10 2894 2894 (2019)
PMID: 31263106 DOI: 10.1038/s41467-019-10609-y

Abstact

The Origin Recognition Complex (ORC) is essential for replication, heterochromatin formation, telomere maintenance and genome stability in eukaryotes. Here we present the structure of the yeast Orc1 BAH domain bound to the nucleosome core particle. Our data reveal that Orc1, unlike its close homolog Sir3 involved in gene silencing, does not appear to discriminate between acetylated and non-acetylated lysine 16, modification states of the histone H4 tail that specify open and closed chromatin respectively. We elucidate the mechanism for this unique feature of Orc1 and hypothesize that its ability to interact with nucleosomes regardless of K16 modification state enables it to perform critical functions in both hetero- and euchromatin. We also show that direct interactions with nucleosomes are essential for Orc1 to maintain the integrity of rDNA borders during meiosis, a process distinct and independent from its known roles in silencing and replication.

Legend

Protein

Chemical

Disease

Primary Citation of related structures