6OKB image
Deposition Date 2019-04-12
Release Date 2019-10-02
Last Version Date 2024-03-20
Entry Detail
PDB ID:
6OKB
Title:
Prohead 2 of the phage T5
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
6.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):D20
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M
Chain Length:299
Number of Molecules:13
Biological Source:Escherichia phage T5
Ligand Molecules
Primary Citation
Capsid expansion of bacteriophage T5 revealed by high resolution cryoelectron microscopy.
Proc.Natl.Acad.Sci.USA 116 21037 21046 (2019)
PMID: 31578255 DOI: 10.1073/pnas.1909645116

Abstact

The large (90-nm) icosahedral capsid of bacteriophage T5 is composed of 775 copies of the major capsid protein (mcp) together with portal, protease, and decoration proteins. Its assembly is a regulated process that involves several intermediates, including a thick-walled round precursor prohead that expands as the viral DNA is packaged to yield a thin-walled and angular mature capsid. We investigated capsid maturation by comparing cryoelectron microscopy (cryo-EM) structures of the prohead, the empty expanded capsid both with and without decoration protein, and the virion capsid at a resolution of 3.8 Å for the latter. We detail the molecular structure of the mcp, its complex pattern of interactions, and their evolution during maturation. The bacteriophage T5 mcp is a variant of the canonical HK97-fold with a high level of plasticity that allows for the precise assembly of a giant macromolecule and the adaptability needed to interact with other proteins and the packaged DNA.

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Primary Citation of related structures