ISDA

Deposition Date 2019-04-09

Release Date 2019-07-03

Last Version Date 2024-10-16

Entry Detail

PDB ID:

6OIR

Keywords:

TRANSFERASE/TRANSFERASE INHIBITOR

Title:

Crystal structure of MYST acetyltransferase domain in complex with inhibitor 62

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.03 Å

R-Value Free:

0.22

R-Value Work:

0.19

R-Value Observed:

0.19

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone acetyltransferase KAT8
Gene (Uniprot):KAT8
Mutations:A142S, L145M, T146I, K157R
Chain IDs:A
Chain Length:273
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9H7Z6 Pfam ID:PF17772, PF01853 EC:2.3.1.48

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
ALY	A	LYS	modified residue

Ligand Molecules

GOL

MNJ

Primary Citation

Discovery of Benzoylsulfonohydrazides as Potent Inhibitors of the Histone Acetyltransferase KAT6A.

Leaver, D.J, Cleary, B, Nguyen, N, Priebbenow, D.L, Lagiakos, H.R, Sanchez, J, Xue, L, Huang, F, Sun, Y, Mujumdar, P, Mudududdla, R, Varghese, S, Teguh, S, Charman, S.A, White, K.L, Katneni, K, Cuellar, M, Strasser, J.M, Dahlin, J.L, Walters, M.A, Street, I.P, Monahan, B.J, Jarman, K.E, Sabroux, H.J, Falk, H, Chung, M.C, Hermans, S.J, Parker, M.W, Thomas, T, Baell, J.B.Show

J.Med.Chem. 62 7146 7159 (2019)

PMID: 31256587 DOI: 10.1021/acs.jmedchem.9b00665

Abstact

A high-throughput screen for inhibitors of the histone acetyltransferase, KAT6A, led to identification of an aryl sulfonohydrazide derivative (CTX-0124143) that inhibited KAT6A with an IC50 of 1.0 μM. Elaboration of the structure-activity relationship and medicinal chemistry optimization led to the discovery of WM-8014 (97), a highly potent inhibitor of KAT6A (IC50 = 0.008 μM). WM-8014 competes with acetyl-CoA (Ac-CoA), and X-ray crystallographic analysis demonstrated binding to the Ac-CoA binding site. Through inhibition of KAT6A activity, WM-8014 induces cellular senescence and represents a unique pharmacological tool.

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Protein

Chemical

Disease

Primary Citation of related structures