6OGD image
Entry Detail
PDB ID:
6OGD
EMDB ID:
Keywords:
Title:
Cryo-EM structure of YenTcA in its prepore state
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-04-02
Release Date:
2019-05-08
Method Details:
Experimental Method:
Resolution:
4.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Toxin subunit YenA1
Chain IDs:A, D, G, J, M
Chain Length:1164
Number of Molecules:5
Biological Source:Yersinia entomophaga
Polymer Type:polypeptide(L)
Description:Toxin subunit YenA2
Chain IDs:B, E, H, K, N
Chain Length:1364
Number of Molecules:5
Biological Source:Yersinia entomophaga
Polymer Type:polypeptide(L)
Description:Chitinase 2
Chain IDs:C, F, I, L, O
Chain Length:633
Number of Molecules:5
Biological Source:Yersinia entomophaga
Ligand Molecules
Primary Citation
Cryo-EM structures of the pore-forming A subunit from the Yersinia entomophaga ABC toxin.
Nat Commun 10 1952 1952 (2019)
PMID: 31028251 DOI: 10.1038/s41467-019-09890-8

Abstact

ABC toxins are pore-forming virulence factors produced by pathogenic bacteria. YenTcA is the pore-forming and membrane binding A subunit of the ABC toxin YenTc, produced by the insect pathogen Yersinia entomophaga. Here we present cryo-EM structures of YenTcA, purified from the native source. The soluble pre-pore structure, determined at an average resolution of 4.4 Å, reveals a pentameric assembly that in contrast to other characterised ABC toxins is formed by two TcA-like proteins (YenA1 and YenA2) and decorated by two endochitinases (Chi1 and Chi2). We also identify conformational changes that accompany membrane pore formation by visualising YenTcA inserted into liposomes. A clear outward rotation of the Chi1 subunits allows for access of the protruding translocation pore to the membrane. Our results highlight structural and functional diversity within the ABC toxin subfamily, explaining how different ABC toxins are capable of recognising diverse hosts.

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