6ODL image
Deposition Date 2019-03-26
Release Date 2020-04-01
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6ODL
Title:
Crystal structure of GluN2A agonist binding domain with 4-butyl-(S)-CCG-IV
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 41
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A
Gene (Uniprot):Grin2a
Chain IDs:A, B
Chain Length:279
Number of Molecules:2
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Stereoselective synthesis of novel 2'-(S)-CCG-IV analogues as potent NMDA receptor agonists.
Eur.J.Med.Chem. 212 113099 113099 (2021)
PMID: 33383257 DOI: 10.1016/j.ejmech.2020.113099

Abstact

We developed a versatile stereoselective route for the synthesis of new 2'-(S)-CCG-IV analogues. The route allows for late stage diversification and thereby provides access to a great variety of conformationally restricted cyclopropyl glutamate analogues. A selection of the 2'-(S)-CCG-IV analogues were evaluated using two-electrode voltage-clamp electrophysiology at recombinant GluN1/GluN2A-D receptors, demonstrating that agonists can be developed with GluN2 subunit-dependent potency and agonist efficacy. We also describe a crystal structure of the GluN2A agonist binding domain in complex with 2'-butyl-(S)-CCG-IV that determines the position of 2'-substituents in (S)-CCG-IV agonists in the glutamate binding site and provides further insight to the structural determinants of their agonist efficacy. The stereoselective synthesis described here enables versatile and straight-forward modifications to diverse analogues of interest for the development of potent subtype-specific NMDA receptor agonists and other applications.

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Primary Citation of related structures
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