ISDA

Deposition Date 2019-03-26

Release Date 2020-04-01

Last Version Date 2023-10-11

Entry Detail

PDB ID:

6ODB

Keywords:

HYDROLASE

Title:

Crystal structure of HDAC8 in complex with compound 3

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.70 Å

R-Value Free:

0.24

R-Value Work:

0.19

R-Value Observed:

0.19

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone deacetylase 8
Gene (Uniprot):HDAC8
Chain IDs:A, B, C
Chain Length:413
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:Q9BY41 Pfam ID:PF00850 EC:3.5.1.98

Ligand Molecules

GOL

M8G

Primary Citation

Structure-based Discovery of Novel N-(E)-N-Hydroxy-3-(2-(2-oxoimidazolidin-1-yl)phenyl)acrylamides as Potent and Selective HDAC8 inhibitors

Zheng, X, Conti, C, Caravella, J, Zablocki, M.-M, Bair, K, Barczak, N, Han, B, Lancia Jr, D, Liu, C, Martin, M, Ng, P.Y, Rudnitskaya, A, Thomason, J.J, Garcia-Dancey, R, Hardy, C, Lahdenranta, J, Leng, C, Li, P, Pardo, E, Saldahna, A, Tan, T, Toms, A.V, Yao, L, Zhang, C.Show

To Be Published ? ? ? (?)

Primary Citation of related structures