6OCW image
Deposition Date 2019-03-25
Release Date 2019-10-09
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6OCW
Title:
Crystal Structure of Mycobacterium tuberculosis Proteasome in Complex with Phenylimidazole-based Inhibitor A85
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha
Gene (Uniprot):prcA
Chain IDs:A, B, C, D, E, F, G, O, P, Q, R, S, T, U
Chain Length:234
Number of Molecules:14
Biological Source:Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):prcB
Chain IDs:H, I, J, K, L, M, N, V, W, X, Y, Z, AA (auth: a), BA (auth: b)
Chain Length:234
Number of Molecules:14
Biological Source:Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Primary Citation
Selective Phenylimidazole-Based Inhibitors of theMycobacterium tuberculosisProteasome.
J.Med.Chem. 62 9246 9253 (2019)
PMID: 31560200 DOI: 10.1021/acs.jmedchem.9b01187

Abstact

Proteasomes of pathogenic microbes have become attractive targets for anti-infectives. Coevolving with its human host, Mycobacterium tuberculosis (Mtb) has developed mechanisms to resist host-imposed nitrosative and oxidative stresses. Genetic deletion or pharmacological inhibition of the Mtb proteasome (Mtb20S) renders nonreplicating Mtb susceptible to reactive nitrogen species in vitro and unable to survive in the lungs of mice, validating the Mtb proteasome as a promising target for anti-Mtb agents. Using a structure-guided and flow chemistry-enabled study of structure-activity relationships, we developed phenylimidazole-based peptidomimetics that are highly potent for Mtb20S. X-ray structures of selected compounds with Mtb20S shed light on their selectivity for mycobacterial over human proteasomes.

Legend

Protein

Chemical

Disease

Primary Citation of related structures