6O8L image
Deposition Date 2019-03-11
Release Date 2020-04-01
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6O8L
Keywords:
Title:
Crystal Structure of C9S apo and reduced Sulfide-responsive transcriptional repressor (SqrR) from Rhodobacter capsulatus.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.36 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 61 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcriptional regulator, ArsR family
Gene (Uniprot):RCAP_rcc01453
Mutagens:C9S
Chain IDs:A
Chain Length:111
Number of Molecules:1
Biological Source:Rhodobacter capsulatus
Primary Citation
Structural basis for persulfide-sensing specificity in a transcriptional regulator.
Nat.Chem.Biol. 17 65 70 (2021)
PMID: 33106663 DOI: 10.1038/s41589-020-00671-9

Abstact

Cysteine thiol-based transcriptional regulators orchestrate the coordinated regulation of redox homeostasis and other cellular processes by 'sensing' or detecting a specific redox-active molecule, which in turn activates the transcription of a specific detoxification pathway. The extent to which these sensors are truly specific in cells for a singular class of reactive small-molecule stressors, for example, reactive oxygen or sulfur species, is largely unknown. Here, we report structural and mechanistic insights into the thiol-based transcriptional repressor SqrR, which reacts exclusively with oxidized sulfur species such as persulfides, to yield a tetrasulfide bridge that inhibits DNA operator-promoter binding. Evaluation of crystallographic structures of SqrR in various derivatized states, coupled with the results of a mass spectrometry-based kinetic profiling strategy, suggest that persulfide selectivity is determined by structural frustration of the disulfide form. These findings led to the identification of an uncharacterized repressor from the bacterial pathogen Acinetobacter baumannii as a persulfide sensor.

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