6O5Z image
Deposition Date 2019-03-04
Release Date 2020-09-16
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6O5Z
Title:
Crystal Structure of the human MLKL pseudokinase domain bound to compound 2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.29 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mixed lineage kinase domain-like protein
Gene (Uniprot):MLKL
Chain IDs:A, B
Chain Length:287
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Potent Inhibition of Necroptosis by Simultaneously Targeting Multiple Effectors of the Pathway.
Acs Chem.Biol. 15 2702 2713 (2020)
PMID: 32902249 DOI: 10.1021/acschembio.0c00482

Abstact

Necroptosis is an inflammatory form of programmed cell death that has been implicated in various human diseases. Compound 2 is a more potent analogue of the published compound 1 and inhibits necroptosis in human and murine cells at nanomolar concentrations. Several target engagement strategies were employed, including cellular thermal shift assays (CETSA) and diazirine-mediated photoaffinity labeling via a bifunctional photoaffinity probe derived from compound 2. These target engagement studies demonstrate that compound 2 binds to all three necroptotic effector proteins (mixed lineage kinase domain-like protein (MLKL), receptor-interacting serine/threonine protein kinase 1 (RIPK1) and receptor-interacting serine/threonine protein kinase 3 (RIPK3)) at different levels in vitro and in cells. Compound 2 also shows efficacy in vivo in a murine model of systemic inflammatory response syndrome (SIRS).

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Primary Citation of related structures