6O43 image
Entry Detail
PDB ID:
6O43
Title:
Crystal structure of a lysin protein from Staphylococcus phage P68
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-02-27
Release Date:
2019-07-10
Method Details:
Experimental Method:
Resolution:
2.08 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Orf11
Chain IDs:A
Chain Length:200
Number of Molecules:1
Biological Source:Staphylococcus phage P68
Ligand Molecules
Primary Citation
Combining random microseed matrix screening and the magic triangle for the efficient structure solution of a potential lysin from bacteriophage P68.
Acta Crystallogr D Struct Biol 75 670 681 (2019)
PMID: 31282476 DOI: 10.1107/S2059798319009008

Abstact

Two commonly encountered bottlenecks in the structure determination of a protein by X-ray crystallography are screening for conditions that give high-quality crystals and, in the case of novel structures, finding derivatization conditions for experimental phasing. In this study, the phasing molecule 5-amino-2,4,6-triiodoisophthalic acid (I3C) was added to a random microseed matrix screen to generate high-quality crystals derivatized with I3C in a single optimization experiment. I3C, often referred to as the magic triangle, contains an aromatic ring scaffold with three bound I atoms. This approach was applied to efficiently phase the structures of hen egg-white lysozyme and the N-terminal domain of the Orf11 protein from Staphylococcus phage P68 (Orf11 NTD) using SAD phasing. The structure of Orf11 NTD suggests that it may play a role as a virion-associated lysin or endolysin.

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Primary Citation of related structures