6O3H image
Deposition Date 2019-02-26
Release Date 2019-07-24
Last Version Date 2024-03-20
Entry Detail
PDB ID:
6O3H
Keywords:
Title:
Icosahedral reconstruction of the thermophilic bacteriophage P74-26 capsid
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major head protein
Gene (Uniprot):P74p88
Chain IDs:A, B, C, D, E, F, G
Chain Length:409
Number of Molecules:7
Biological Source:Thermus virus P74-26
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:P74-26 Head Decoration Protein
Gene (Uniprot):P74p87
Chain IDs:H, I, J, K, L, M, N
Chain Length:146
Number of Molecules:7
Biological Source:Thermus virus P74-26
Ligand Molecules
Primary Citation
Principles for enhancing virus capsid capacity and stability from a thermophilic virus capsid structure.
Nat Commun 10 4471 4471 (2019)
PMID: 31578335 DOI: 10.1038/s41467-019-12341-z

Abstact

The capsids of double-stranded DNA viruses protect the viral genome from the harsh extracellular environment, while maintaining stability against the high internal pressure of packaged DNA. To elucidate how capsids maintain stability in an extreme environment, we use cryoelectron microscopy to determine the capsid structure of thermostable phage P74-26 to 2.8-Å resolution. We find P74-26 capsids exhibit an overall architecture very similar to those of other tailed bacteriophages, allowing us to directly compare structures to derive the structural basis for enhanced stability. Our structure reveals lasso-like interactions that appear to function like catch bonds. This architecture allows the capsid to expand during genome packaging, yet maintain structural stability. The P74-26 capsid has T = 7 geometry despite being twice as large as mesophilic homologs. Capsid capacity is increased with a larger, flatter major capsid protein. Given these results, we predict decreased icosahedral complexity (i.e. T ≤ 7) leads to a more stable capsid assembly.

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Primary Citation of related structures