6O2Y image
Deposition Date 2019-02-25
Release Date 2019-06-26
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6O2Y
Title:
Crystal structure of IDH1 R132H mutant in complex with compound 24
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Isocitrate dehydrogenase [NADP] cytoplasmic
Gene (Uniprot):IDH1
Mutations:R132H
Chain IDs:A, B, C
Chain Length:425
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Discovery and Optimization of Quinolinone Derivatives as Potent, Selective, and Orally Bioavailable Mutant Isocitrate Dehydrogenase 1 (mIDH1) Inhibitors.
J.Med.Chem. 62 6575 6596 (2019)
PMID: 31199148 DOI: 10.1021/acs.jmedchem.9b00362

Abstact

Mutations at the arginine residue (R132) in isocitrate dehydrogenase 1 (IDH1) are frequently identified in various human cancers. Inhibition of mutant IDH1 (mIDH1) with small molecules has been clinically validated as a promising therapeutic treatment for acute myeloid leukemia and multiple solid tumors. Herein, we report the discovery and optimization of a series of quinolinones to provide potent and orally bioavailable mIDH1 inhibitors with selectivity over wild-type IDH1. The X-ray structure of an early lead 24 in complex with mIDH1-R132H shows that the inhibitor unexpectedly binds to an allosteric site. Efforts to improve the in vitro and in vivo absorption, distribution, metabolism, and excretion (ADME) properties of 24 yielded a preclinical candidate 63. The detailed preclinical ADME and pharmacology studies of 63 support further development of quinolinone-based mIDH1 inhibitors as therapeutic agents in human trials.

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Primary Citation of related structures