6O2S image
Deposition Date 2019-02-24
Release Date 2019-05-22
Last Version Date 2024-03-20
Entry Detail
PDB ID:
6O2S
Title:
Deacetylated Microtubules
Biological Source:
Source Organism:
Sus scrofa (Taxon ID: 9823)
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tubulin alpha-1B chain
Gene (Uniprot):TUBA1B
Chain IDs:A (auth: 1A), B (auth: 1B), C (auth: 1C), D (auth: 1D), E (auth: 1E), F (auth: 1F), G (auth: 1G), H (auth: 1I), I (auth: 1J), J (auth: 1K), K (auth: 1L), L (auth: 1M), M (auth: 1N), AA (auth: 2A), BA (auth: 2B), CA (auth: 2C), DA (auth: 2D), EA (auth: 2E), FA (auth: 2F), GA (auth: 2G), HA (auth: 2I), IA (auth: 2J), JA (auth: 2K), KA (auth: 2L), LA (auth: 2M), MA (auth: 2N), AB (auth: 3A), BB (auth: 3B), CB (auth: 3C), DB (auth: 3D), EB (auth: 3E), FB (auth: 3F), GB (auth: 3G), HB (auth: 3I), IB (auth: 3J), JB (auth: 3K), KB (auth: 3L), LB (auth: 3M), MB (auth: 3N), AC (auth: 4A), BC (auth: 4B), CC (auth: 4C), DC (auth: 4D), EC (auth: 4E), FC (auth: 4F), GC (auth: 4G), HC (auth: 4I), IC (auth: 4J), JC (auth: 4K), KC (auth: 4L), LC (auth: 4M), MC (auth: 4N)
Chain Length:451
Number of Molecules:52
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Molecule:Tubulin beta chain
Chain IDs:N (auth: 1H), O (auth: 1O), P (auth: 1P), Q (auth: 1Q), R (auth: 1R), S (auth: 1S), T (auth: 1T), U (auth: 1U), V (auth: 1V), W (auth: 1W), X (auth: 1X), Y (auth: 1Y), Z (auth: 1Z), NA (auth: 2H), OA (auth: 2O), PA (auth: 2P), QA (auth: 2Q), RA (auth: 2R), SA (auth: 2S), TA (auth: 2T), UA (auth: 2U), VA (auth: 2V), WA (auth: 2W), XA (auth: 2X), YA (auth: 2Y), ZA (auth: 2Z), NB (auth: 3H), OB (auth: 3O), PB (auth: 3P), QB (auth: 3Q), RB (auth: 3R), SB (auth: 3S), TB (auth: 3T), UB (auth: 3U), VB (auth: 3V), WB (auth: 3W), XB (auth: 3X), YB (auth: 3Y), ZB (auth: 3Z), NC (auth: 4H), OC (auth: 4O), PC (auth: 4P), QC (auth: 4Q), RC (auth: 4R), SC (auth: 4S), TC (auth: 4T), UC (auth: 4U), VC (auth: 4V), WC (auth: 4W), XC (auth: 4X), YC (auth: 4Y), ZC (auth: 4Z)
Chain Length:445
Number of Molecules:52
Biological Source:Sus scrofa
Primary Citation
Effects of alpha-tubulin acetylation on microtubule structure and stability.
Proc.Natl.Acad.Sci.USA 116 10366 10371 (2019)
PMID: 31072936 DOI: 10.1073/pnas.1900441116

Abstact

Acetylation of K40 in α-tubulin is the sole posttranslational modification to mark the luminal surface of microtubules. It is still controversial whether its relationship with microtubule stabilization is correlative or causative. We have obtained high-resolution cryo-electron microscopy (cryo-EM) reconstructions of pure samples of αTAT1-acetylated and SIRT2-deacetylated microtubules to visualize the structural consequences of this modification and reveal its potential for influencing the larger assembly properties of microtubules. We modeled the conformational ensembles of the unmodified and acetylated states by using the experimental cryo-EM density as a structural restraint in molecular dynamics simulations. We found that acetylation alters the conformational landscape of the flexible loop that contains αK40. Modification of αK40 reduces the disorder of the loop and restricts the states that it samples. We propose that the change in conformational sampling that we describe, at a location very close to the lateral contacts site, is likely to affect microtubule stability and function.

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