6O2H image
Deposition Date 2019-02-22
Release Date 2020-02-26
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6O2H
Keywords:
Title:
Hen lysozyme in triclinic space group at ambient temperature - diffuse scattering dataset
Biological Source:
Source Organism:
Gallus gallus (Taxon ID: 9031)
Method Details:
Experimental Method:
Resolution:
1.21 Å
R-Value Free:
0.11
R-Value Work:
0.09
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lysozyme C
Gene (Uniprot):LYZ
Chain IDs:A
Chain Length:129
Number of Molecules:1
Biological Source:Gallus gallus
Primary Citation
Diffuse X-ray scattering from correlated motions in a protein crystal.
Nat Commun 11 1271 1271 (2020)
PMID: 32152274 DOI: 10.1038/s41467-020-14933-6

Abstact

Protein dynamics are integral to biological function, yet few techniques are sensitive to collective atomic motions. A long-standing goal of X-ray crystallography has been to combine structural information from Bragg diffraction with dynamic information contained in the diffuse scattering background. However, the origin of macromolecular diffuse scattering has been poorly understood, limiting its applicability. We present a finely sampled diffuse scattering map from triclinic lysozyme with unprecedented accuracy and detail, clearly resolving both the inter- and intramolecular correlations. These correlations are studied theoretically using both all-atom molecular dynamics and simple vibrational models. Although lattice dynamics reproduce most of the diffuse pattern, protein internal dynamics, which include hinge-bending motions, are needed to explain the short-ranged correlations revealed by Patterson analysis. These insights lay the groundwork for animating crystal structures with biochemically relevant motions.

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