6O0B image
Deposition Date 2019-02-15
Release Date 2019-09-04
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6O0B
Keywords:
Title:
Structural and Mechanistic Insights into CO2 Activation by Nitrogenase Iron Protein
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.21
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nitrogenase iron protein
Gene (Uniprot):nifH
Chain IDs:A, B
Chain Length:289
Number of Molecules:2
Biological Source:Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
Ligand Molecules
Primary Citation
Structural and Mechanistic Insights into CO2Activation by Nitrogenase Iron Protein.
Chemistry 25 13078 13082 (2019)
PMID: 31402524 DOI: 10.1002/chem.201903387

Abstact

The Fe protein of nitrogenase catalyzes the ambient reduction of CO2 when its cluster is present in the all-ferrous, [Fe4 S4 ]0 oxidation state. Here, we report a combined structural and theoretical study that probes the unique reactivity of the all-ferrous Fe protein toward CO2 . Structural comparisons of the Azotobacter vinelandii Fe protein in the [Fe4 S4 ]0 and [Fe4 S4 ]+ states point to a possible asymmetric functionality of a highly conserved Arg pair in CO2 binding and reduction. Density functional theory (DFT) calculations provide further support for the asymmetric coordination of O by the "proximal" Arg and binding of C to a unique Fe atom of the all-ferrous cluster, followed by donation of protons by the proximate guanidinium group of Arg that eventually results in the scission of a C-O bond. These results provide important mechanistic and structural insights into CO2 activation by a surface-exposed, scaffold-held [Fe4 S4 ] cluster.

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Primary Citation of related structures