6NZU image
Deposition Date 2019-02-14
Release Date 2019-05-22
Last Version Date 2025-04-02
Entry Detail
PDB ID:
6NZU
Title:
Structure of the human frataxin-bound iron-sulfur cluster assembly complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Escherichia coli (Taxon ID: 562)
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cysteine desulfurase, mitochondrial
Gene (Uniprot):NFS1
Chain IDs:A, E
Chain Length:403
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LYR motif-containing protein 4
Gene (Uniprot):LYRM4
Chain IDs:B, F
Chain Length:92
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Acyl carrier protein
Chain IDs:C, G
Chain Length:74
Number of Molecules:2
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Iron-sulfur cluster assembly enzyme ISCU, mitochondrial
Gene (Uniprot):ISCU
Chain IDs:D, H
Chain Length:124
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Frataxin, mitochondrial
Gene (Uniprot):FXN
Chain IDs:I, J
Chain Length:132
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure of the human frataxin-bound iron-sulfur cluster assembly complex provides insight into its activation mechanism.
Nat Commun 10 2210 2210 (2019)
PMID: 31101807 DOI: 10.1038/s41467-019-09989-y

Abstact

The core machinery for de novo biosynthesis of iron-sulfur clusters (ISC), located in the mitochondria matrix, is a five-protein complex containing the cysteine desulfurase NFS1 that is activated by frataxin (FXN), scaffold protein ISCU, accessory protein ISD11, and acyl-carrier protein ACP. Deficiency in FXN leads to the loss-of-function neurodegenerative disorder Friedreich's ataxia (FRDA). Here the 3.2 Å resolution cryo-electron microscopy structure of the FXN-bound active human complex, containing two copies of the NFS1-ISD11-ACP-ISCU-FXN hetero-pentamer, delineates the interactions of FXN with other component proteins of the complex. FXN binds at the interface of two NFS1 and one ISCU subunits, modifying the local environment of a bound zinc ion that would otherwise inhibit NFS1 activity in complexes without FXN. Our structure reveals how FXN facilitates ISC production through stabilizing key loop conformations of NFS1 and ISCU at the protein-protein interfaces, and suggests how FRDA clinical mutations affect complex formation and FXN activation.

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Primary Citation of related structures