6NZB image
Deposition Date 2019-02-13
Release Date 2019-09-25
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6NZB
Keywords:
Title:
Crystal structure of E. coli fumarase C S318A variant with closed SS Loop at 1.37 angstrom resolution
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.37 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fumarate hydratase class II
Gene (Uniprot):fumC
Mutagens:S318A
Chain IDs:A, B
Chain Length:472
Number of Molecules:2
Biological Source:Escherichia coli (strain K12)
Ligand Molecules
Primary Citation
Closed fumarase C active-site structures reveal SS Loop residue contribution in catalysis.
Febs Lett. 594 337 357 (2020)
PMID: 31514245 DOI: 10.1002/1873-3468.13603

Abstact

Fumarase C (FumC) catalyzes the reversible conversion of fumarate to S-malate. Previous structural investigations within the superfamily have reported a dynamic structural segment, termed the SS Loop. To date, active-site asymmetry has raised the question of how SS Loop placement affects participation of key residues during the reaction. Herein, we report structural and kinetic analyses from Escherichia coli FumC variants to understand the contribution of SS Loop residues S318, K324, and N326. High-resolution X-ray crystallographic results reveal three distinct FumC active-site conformations; disordered-open, ordered-open, and the newly discovered ordered-closed. Surprisingly, each SS Loop variant has unaffected Michaelis constants coupled to reductions in turnover number. Based upon our structural and functional analyses, we propose structural and catalytic roles for each of the aforementioned residues.

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