6NY9 image
Entry Detail
PDB ID:
6NY9
Keywords:
Title:
Alpha/beta hydrolase domain-containing protein 10 from mouse
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-02-11
Release Date:
2020-01-22
Method Details:
Experimental Method:
Resolution:
1.66 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Mycophenolic acid acyl-glucuronide esterase, mitochondrial
Chain IDs:A (auth: B)
Chain Length:250
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
ABHD10 is an S-depalmitoylase affecting redox homeostasis through peroxiredoxin-5.
Nat.Chem.Biol. 15 1232 1240 (2019)
PMID: 31740833 DOI: 10.1038/s41589-019-0399-y

Abstact

S-Palmitoylation is a reversible lipid post-translational modification that has been observed on mitochondrial proteins, but both the regulation and functional consequences of mitochondrial S-palmitoylation are poorly understood. Here, we show that perturbing the 'erasers' of S-palmitoylation, acyl protein thioesterases (APTs), with either pan-active inhibitors or a mitochondrial-targeted APT inhibitor, diminishes the antioxidant buffering capacity of mitochondria. Surprisingly, this effect was not mediated by the only known mitochondrial APT, but rather by a resident mitochondrial protein with no known endogenous function, ABHD10. We show that ABHD10 is a member of the APT family of regulatory proteins and identify peroxiredoxin-5 (PRDX5), a key antioxidant protein, as a target of ABHD10 S-depalmitoylase activity. We then find that ABHD10 regulates the S-palmitoylation status of the nucleophilic active site residue of PRDX5, providing a direct mechanistic connection between ABHD10-mediated S-depalmitoylation of PRDX5 and its antioxidant capacity.

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