6NX0 image
Entry Detail
PDB ID:
6NX0
Keywords:
Title:
Crystal structure of the diheme peroxidase BthA from Burkholderia thailandensis E264
Biological Source:
PDB Version:
Deposition Date:
2019-02-07
Release Date:
2019-03-20
Method Details:
Experimental Method:
Resolution:
1.54 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Di-haem cytochrome c peroxidase family protein
Chain IDs:A
Chain Length:477
Number of Molecules:1
Biological Source:Burkholderia thailandensis E264
Primary Citation
A widely distributed diheme enzyme from Burkholderia that displays an atypically stable bis-Fe(IV) state.
Nat Commun 10 1101 1101 (2019)
PMID: 30846684 DOI: 10.1038/s41467-019-09020-4

Abstact

Bacterial diheme peroxidases represent a diverse enzyme family with functions that range from hydrogen peroxide (H2O2) reduction to post-translational modifications. By implementing a sequence similarity network (SSN) of the bCCP_MauG superfamily, we present the discovery of a unique diheme peroxidase BthA conserved in all Burkholderia. Using a combination of magnetic resonance, near-IR and Mössbauer spectroscopies and electrochemical methods, we report that BthA is capable of generating a bis-Fe(IV) species previously thought to be a unique feature of the diheme enzyme MauG. However, BthA is not MauG-like in that it catalytically converts H2O2 to water, and a 1.54-Å resolution crystal structure reveals striking differences between BthA and other superfamily members, including the essential residues for both bis-Fe(IV) formation and H2O2 turnover. Taken together, we find that BthA represents a previously undiscovered class of diheme enzymes, one that stabilizes a bis-Fe(IV) state and catalyzes H2O2 turnover in a mechanistically distinct manner.

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