6NWZ image
Deposition Date 2019-02-07
Release Date 2020-02-12
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6NWZ
Keywords:
Title:
Crystal structure of Agd3 a novel carbohydrate deacetylase
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Carbohydrate deacetylase Agd3
Gene (Uniprot):AFUA_3G07870
Chain IDs:A
Chain Length:684
Number of Molecules:1
Biological Source:Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
Primary Citation
Structural and biochemical characterization of the exopolysaccharide deacetylase Agd3 required for Aspergillus fumigatus biofilm formation.
Nat Commun 11 2450 2450 (2020)
PMID: 32415073 DOI: 10.1038/s41467-020-16144-5

Abstact

The exopolysaccharide galactosaminogalactan (GAG) is an important virulence factor of the fungal pathogen Aspergillus fumigatus. Deletion of a gene encoding a putative deacetylase, Agd3, leads to defects in GAG deacetylation, biofilm formation, and virulence. Here, we show that Agd3 deacetylates GAG in a metal-dependent manner, and is the founding member of carbohydrate esterase family CE18. The active site is formed by four catalytic motifs that are essential for activity. The structure of Agd3 includes an elongated substrate-binding cleft formed by a carbohydrate binding module (CBM) that is the founding member of CBM family 87. Agd3 homologues are encoded in previously unidentified putative bacterial exopolysaccharide biosynthetic operons and in other fungal genomes.

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