6NW2 image
Deposition Date 2019-02-05
Release Date 2019-05-01
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6NW2
Title:
Structure of human RIPK1 kinase domain in complex with compound 11
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Receptor-interacting serine/threonine-protein kinase 1
Gene (Uniprot):RIPK1
Chain IDs:A, B
Chain Length:310
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Potent and selective inhibitors of receptor-interacting protein kinase 1 that lack an aromatic back pocket group.
Bioorg.Med.Chem.Lett. 29 1497 1501 (2019)
PMID: 31000154 DOI: 10.1016/j.bmcl.2019.04.014

Abstact

Receptor-interacting protein kinase 1 (RIPK1), a key component of the cellular necroptosis pathway, has gained recognition as an important therapeutic target. Pharmacologic inhibition or genetic inactivation of RIPK1 has shown promise in animal models of disease ranging from acute ischemic conditions, chronic inflammation, and neurodegeneration. We present here a class of RIPK1 inhibitors that is distinguished by a lack of a lipophilic aromatic group present in most literature inhibitors that typically occupies a hydrophobic back pocket of the protein active site. Despite not having this ubiquitous feature of many known RIPK1 inhibitors, we were able to obtain compounds with good potency, kinase selectivity, and pharmacokinetic properties in rats. The use of the lipophilic yet metabolically stable pentafluoroethyl group was critical to balancing the potency and properties of optimized analogs.

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Chemical

Disease

Primary Citation of related structures
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