6NU4 image
Deposition Date 2019-01-30
Release Date 2019-05-08
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6NU4
Keywords:
Title:
Solution structure of the Arabidopsis thaliana RALF8 peptide
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein RALF-like 8
Gene (Uniprot):RALFL8
Chain IDs:A
Chain Length:56
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Ligand Molecules
Primary Citation
Function and solution structure of the Arabidopsis thaliana RALF8 peptide.
Protein Sci. 28 1115 1126 (2019)
PMID: 31004454 DOI: 10.1002/pro.3628

Abstact

We report the recombinant preparation from Escherichia coli cells of samples of two closely related, small, secreted cysteine-rich plant peptides: rapid alkalinization factor 1 (RALF1) and rapid alkalinization factor 8 (RALF8). Purified samples of the native sequence of RALF8 exhibited well-resolved nuclear magnetic resonance (NMR) spectra and also biological activity through interaction with a plant receptor kinase, cytoplasmic calcium mobilization, and in vivo root growth suppression. By contrast, RALF1 could only be isolated from inclusion bodies as a construct containing an N-terminal His-tag; its poorly resolved NMR spectrum was indicative of aggregation. We prepared samples of the RALF8 peptide labeled with 15 N and 13 C for NMR analysis and obtained near complete 1 H, 13 C, and 15 N NMR assignments; determined the disulfide pairing of its four cysteine residues; and examined its solution structure. RALF8 is mostly disordered except for the two loops spanned by each of its two disulfide bridges.

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Primary Citation of related structures