6NU0 image
Deposition Date 2019-01-30
Release Date 2020-01-08
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6NU0
Keywords:
Title:
Solution NMR structure of 1918 NS1 effector domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
40
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Non-structural protein 1
Mutations:W187R
Chain IDs:A
Chain Length:230
Number of Molecules:1
Biological Source:Influenza A virus
Ligand Molecules
Primary Citation
The structure and conformational plasticity of the nonstructural protein 1 of the 1918 influenza A virus.
Biochem.Biophys.Res.Commun. 518 178 182 (2019)
PMID: 31420169 DOI: 10.1016/j.bbrc.2019.08.027

Abstact

Nonstructural protein 1 (NS1) is a multifunctional virulence factor of influenza virus. The effector domain (ED) of influenza viruses is capable of binding to a variety of host factors, however, the molecular basis of the interactions remains to be investigated. The isolated NS1-ED exists in equilibrium between the monomer and homodimer. Although the structural diversity of the dimer interface has been well-characterized, limited information is available regarding the internal conformational heterogeneity of the monomeric NS1-ED. Here, we present the solution NMR structure of the NS1-ED W187R of the 1918 influenza A virus, which caused the "Spanish flu." Structural plasticity is an essential property to understand the molecular mechanism by which NS1-ED interacts with multiple host proteins. Structural comparison with the NS1-ED from influenza A/Udorn/1972 (Ud) strain revealed a similar overall structure but a distinct conformational variation and flexibility. Our results suggest that conformational flexibility of the NS1-ED might differ depending on the influenza strain.

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