6NS6 image
Deposition Date 2019-01-24
Release Date 2019-03-27
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6NS6
Keywords:
Title:
Crystal structure of fungal lipoxygenase from Fusarium graminearum. P21 crystal form.
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:lipoxygenase
Gene (Uniprot):FG02216.1
Chain IDs:A, B
Chain Length:769
Number of Molecules:2
Biological Source:Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
Ligand Molecules
Primary Citation
An ensemble of lipoxygenase structures reveals novel conformations of the Fe coordination sphere.
Protein Sci. 28 920 927 (2019)
PMID: 30861228 DOI: 10.1002/pro.3602

Abstact

The regio- and stereo-specific oxygenation of polyunsaturated fatty acids is catalyzed by lipoxygenases (LOX); both Fe and Mn forms of the enzyme have been described. Structural elements of the Fe and Mn coordination spheres and the helical catalytic domain in which the metal center resides are highly conserved. However, animal, plant, and microbial LOX each have distinct features. We report five crystal structures of a LOX from the fungal plant pathogen Fusarium graminearum. This LOX displays a novel amino terminal extension that provides a wrapping domain for dimerization. Moreover, this extension appears to interfere with the iron coordination sphere, as the typical LOX configuration is not observed at the catalytic metal when the enzyme is dimeric. Instead novel tetra-, penta-, and hexa-coordinate Fe2+ ligations are apparent. In contrast, a monomeric structure indicates that with repositioning of the amino terminal segment, the enzyme can assume a productive conformation with the canonical Fe2+ coordination sphere.

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Primary Citation of related structures