6NQT image
Deposition Date 2019-01-21
Release Date 2020-01-29
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6NQT
Title:
GalNac-T2 soaked with UDP-sugar
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.05 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Polypeptide N-acetylgalactosaminyltransferase 2
Gene (Uniprot):GALNT2
Mutations:ILE253A, LEU310A
Chain IDs:A, B, C, D, E, F
Chain Length:571
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
Bump-and-Hole Engineering Identifies Specific Substrates of Glycosyltransferases in Living Cells.
Mol.Cell 78 824 834.e15 (2020)
PMID: 32325029 DOI: 10.1016/j.molcel.2020.03.030

Abstact

Studying posttranslational modifications classically relies on experimental strategies that oversimplify the complex biosynthetic machineries of living cells. Protein glycosylation contributes to essential biological processes, but correlating glycan structure, underlying protein, and disease-relevant biosynthetic regulation is currently elusive. Here, we engineer living cells to tag glycans with editable chemical functionalities while providing information on biosynthesis, physiological context, and glycan fine structure. We introduce a non-natural substrate biosynthetic pathway and use engineered glycosyltransferases to incorporate chemically tagged sugars into the cell surface glycome of the living cell. We apply the strategy to a particularly redundant yet disease-relevant human glycosyltransferase family, the polypeptide N-acetylgalactosaminyl transferases. This approach bestows a gain-of-chemical-functionality modification on cells, where the products of individual glycosyltransferases can be selectively characterized or manipulated to understand glycan contribution to major physiological processes.

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Primary Citation of related structures