6NPY image
Entry Detail
PDB ID:
6NPY
EMDB ID:
Keywords:
Title:
Cryo-EM structure of NLRP3 bound to NEK7
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-01-18
Release Date:
2019-06-19
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:NACHT, LRR and PYD domains-containing protein 3
Mutations:D133I, R135C, K136A, K140A
Chain IDs:A
Chain Length:1034
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Protein kinase R,Serine/threonine-protein kinase Nek7
Mutations:L54R, V58K, P59T, K87A, A99V, S100C, E103T, D104G
Chain IDs:B
Chain Length:279
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural mechanism for NEK7-licensed activation of NLRP3 inflammasome.
Nature 570 338 343 (2019)
PMID: 31189953 DOI: 10.1038/s41586-019-1295-z

Abstact

The NLRP3 inflammasome can be activated by stimuli that include nigericin, uric acid crystals, amyloid-β fibrils and extracellular ATP. The mitotic kinase NEK7 licenses the assembly and activation of the NLRP3 inflammasome in interphase. Here we report a cryo-electron microscopy structure of inactive human NLRP3 in complex with NEK7, at a resolution of 3.8 Å. The earring-shaped NLRP3 consists of curved leucine-rich-repeat and globular NACHT domains, and the C-terminal lobe of NEK7 nestles against both NLRP3 domains. Structural recognition between NLRP3 and NEK7 is confirmed by mutagenesis both in vitro and in cells. Modelling of an active NLRP3-NEK7 conformation based on the NLRC4 inflammasome predicts an additional contact between an NLRP3-bound NEK7 and a neighbouring NLRP3. Mutations to this interface abolish the ability of NEK7 or NLRP3 to rescue NLRP3 activation in NEK7-knockout or NLRP3-knockout cells. These data suggest that NEK7 bridges adjacent NLRP3 subunits with bipartite interactions to mediate the activation of the NLRP3 inflammasome.

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