6NOM image
Deposition Date 2019-01-16
Release Date 2019-08-21
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6NOM
Title:
NMR solution structure of Pisum sativum defensin 2 (Psd2) provides evidence for the presence of hydrophobic surface clusters
Biological Source:
Source Organism:
Pisum sativum (Taxon ID: 3888)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
20
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Defensin-2
Chain IDs:A
Chain Length:47
Number of Molecules:1
Biological Source:Pisum sativum
Ligand Molecules
Primary Citation
Nuclear magnetic resonance solution structure of Pisum sativum defensin 2 provides evidence for the presence of hydrophobic surface-clusters.
Proteins 88 242 246 (2020)
PMID: 31294889 DOI: 10.1002/prot.25783

Abstact

Pisum sativum defensin 2 (Psd2) is a small (4.7 kDa) antifungal peptide whose structure is held together by four conserved disulfide bridges. Psd2 shares the cysteine-stabilized alpha-beta (CSαβ) fold, which lacks a regular hydrophobic core. All hydrophobic residues are exposed to the surface, except for leucine 6. They are clustered in the surface formed by two loops, between β1 and α-helix and β2 and β3 sheets. The observation of surface hydrophobic clusters reveals a remarkable evolution of the CSαβ fold to expose and reorganize hydrophobic residues, which facilitates creating versatile binding sites.

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Primary Citation of related structures