6NM6 image
Entry Detail
PDB ID:
6NM6
Keywords:
Title:
Crystal Structure of HIV-1 BG505 SOSIP.664 Prefusion Env Trimer Bound to N6 FR3-03 scFv in Complex with Crystallization Chaperones 3H109L Fab and 35O22 scFv at 3.2 Angstrom
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2019-01-10
Release Date:
2019-02-27
Method Details:
Experimental Method:
Resolution:
2.74 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp41
Mutations:I559P, T605C
Chain IDs:A (auth: B)
Chain Length:153
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:35O22 scFv heavy chain
Mutations:E10T, L11T, K12T, A16S, I68N, K83T, F84S
Chain IDs:B (auth: D)
Chain Length:153
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:35O22 scFv light chain
Chain IDs:C (auth: E)
Chain Length:130
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp120
Mutations:N137A, T332N, A501C
Chain IDs:D (auth: G)
Chain Length:481
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:3H109L Fab heavy chain
Chain IDs:E (auth: H)
Chain Length:244
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:3H109L Fab light chain
Mutations:E184M, S188M
Chain IDs:F (auth: L)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:N6 FR3-03 heavy chain
Chain IDs:G (auth: U)
Chain Length:145
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:N6 FR3-03 light chain
Chain IDs:H (auth: V)
Chain Length:122
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Improvement of antibody functionality by structure-guided paratope engraftment.
Nat Commun 10 721 721 (2019)
PMID: 30760721 DOI: 10.1038/s41467-019-08658-4

Abstact

Broadly neutralizing antibodies (bNAbs) represent a promising alternative to antiretroviral drugs for HIV-1 prevention and treatment. Selected antibodies to the CD4-binding site bolster envelope trimer binding via quaternary contacts. Here, we rationally engraft a new paratope, i.e., the extended heavy-chain framework region 3 (FR3) loop of VRC03, which mediates quaternary interaction, onto several potent bNAbs, enabling them to reach an adjacent gp120 protomer. The interactive quaternary surface is delineated by solving the crystal structure of two FR3 loop-chimeric antibodies. Chimerization enhances the neutralizing activity of several potent bNAbs against a majority of global HIV-1 strains. Compared to unmodified antibodies, chimeric antibodies display lower autoreactivity and prolonged in vivo half-life in huFcRn mice and rhesus macaques. Thus, paratope engraftment may be used to expand the epitope repertory of natural antibodies, improving their functionality for disease prevention and treatment.

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Primary Citation of related structures