6NM5 image
Deposition Date 2019-01-10
Release Date 2019-07-24
Last Version Date 2024-03-20
Entry Detail
PDB ID:
6NM5
Keywords:
Title:
F-pilus/MS2 Maturation protein complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
6.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Type IV conjugative transfer system pilin TraA
Chain IDs:A (auth: 1A), B (auth: 1B), C (auth: 1C), D (auth: 1D), E (auth: 1E), F (auth: 1F), G (auth: 1G), H (auth: 1H), I (auth: 1I), J (auth: 1J), K (auth: 1K), L (auth: 1L), M (auth: 1M), N (auth: 1N), O (auth: 1O), P (auth: 2A), Q (auth: 2B), R (auth: 2C), S (auth: 2D), T (auth: 2E), U (auth: 2F), V (auth: 2G), W (auth: 2H), X (auth: 2I), Y (auth: 2J), Z (auth: 2K), AA (auth: 2L), BA (auth: 2M), CA (auth: 2N), DA (auth: 2O), EA (auth: 3A), FA (auth: 3B), GA (auth: 3C), HA (auth: 3D), IA (auth: 3E), JA (auth: 3F), KA (auth: 3G), LA (auth: 3H), MA (auth: 3I), NA (auth: 3J), OA (auth: 3K), PA (auth: 3L), QA (auth: 3M), RA (auth: 3N), SA (auth: 3O), TA (auth: 4A), UA (auth: 4B), VA (auth: 4C), WA (auth: 4D), XA (auth: 4E), YA (auth: 4F), ZA (auth: 4G), AB (auth: 4H), BB (auth: 4I), CB (auth: 4J), DB (auth: 4K), EB (auth: 4L), FB (auth: 4M), GB (auth: 4N), HB (auth: 4O), IB (auth: 5A), JB (auth: 5B), KB (auth: 5C), LB (auth: 5D), MB (auth: 5E), NB (auth: 5F), OB (auth: 5G), PB (auth: 5H), QB (auth: 5I), RB (auth: 5J), SB (auth: 5K), TB (auth: 5L), UB (auth: 5M), VB (auth: 5N), WB (auth: 5O)
Chain Length:65
Number of Molecules:75
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:Maturation protein
Gene (Uniprot):A
Chain IDs:XB (auth: M)
Chain Length:393
Number of Molecules:1
Biological Source:Enterobacteria phage MS2
Primary Citation
Structural basis for the adsorption of a single-stranded RNA bacteriophage.
Nat Commun 10 3130 3130 (2019)
PMID: 31311931 DOI: 10.1038/s41467-019-11126-8

Abstact

Single-stranded RNA bacteriophages (ssRNA phages) infect Gram-negative bacteria via a single maturation protein (Mat), which attaches to a retractile pilus of the host. Here we present structures of the ssRNA phage MS2 in complex with the Escherichia coli F-pilus, showing a network of hydrophobic and electrostatic interactions at the Mat-pilus interface. Moreover, binding of the pilus induces slight orientational variations of the Mat relative to the rest of the phage capsid, priming the Mat-connected genomic RNA (gRNA) for its release from the virions. The exposed tip of the attached Mat points opposite to the direction of the pilus retraction, which may facilitate the translocation of the gRNA from the capsid into the host cytosol. In addition, our structures determine the orientation of the assembled F-pilin subunits relative to the cell envelope, providing insights into the F-like type IV secretion systems.

Legend

Protein

Chemical

Disease

Primary Citation of related structures