6NK5 image
Entry Detail
PDB ID:
6NK5
EMDB ID:
Title:
Electron Cryo-Microscopy Of Chikungunya VLP
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2019-01-04
Release Date:
2019-05-22
Method Details:
Experimental Method:
Resolution:
4.16 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:E1 glycoprotein
Chain IDs:A, D (auth: B), G (auth: C), J (auth: D)
Chain Length:439
Number of Molecules:4
Biological Source:Chikungunya virus (strain 37997)
Polymer Type:polypeptide(L)
Description:E2 glycoprotein
Chain IDs:B (auth: E), E (auth: F), H (auth: G), K (auth: H)
Chain Length:419
Number of Molecules:4
Biological Source:Chikungunya virus (strain 37997)
Polymer Type:polypeptide(L)
Description:Capsid protein
Chain IDs:C (auth: I), F (auth: J), I (auth: K), L
Chain Length:151
Number of Molecules:4
Biological Source:Chikungunya virus (strain 37997)
Ligand Molecules
Primary Citation
Cryo-EM Structure of Chikungunya Virus in Complex with the Mxra8 Receptor.
Cell 177 1725 ? (2019)
PMID: 31080061 DOI: 10.1016/j.cell.2019.04.006

Abstact

Mxra8 is a receptor for multiple arthritogenic alphaviruses that cause debilitating acute and chronic musculoskeletal disease in humans. Herein, we present a 2.2 Å resolution X-ray crystal structure of Mxra8 and 4 to 5 Å resolution cryo-electron microscopy reconstructions of Mxra8 bound to chikungunya (CHIKV) virus-like particles and infectious virus. The Mxra8 ectodomain contains two strand-swapped Ig-like domains oriented in a unique disulfide-linked head-to-head arrangement. Mxra8 binds by wedging into a cleft created by two adjacent CHIKV E2-E1 heterodimers in one trimeric spike and engaging a neighboring spike. Two binding modes are observed with the fully mature VLP, with one Mxra8 binding with unique contacts. Only the high-affinity binding mode was observed in the complex with infectious CHIKV, as viral maturation and E3 occupancy appear to influence receptor binding-site usage. Our studies provide insight into how Mxra8 binds CHIKV and creates a path for developing alphavirus entry inhibitors.

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Protein

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Disease

Primary Citation of related structures