6NFR image
Entry Detail
PDB ID:
6NFR
Title:
CopC from Pseudomonas fluorescens
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-12-20
Release Date:
2019-04-24
Method Details:
Experimental Method:
Resolution:
1.00 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:CopC
Chain IDs:A
Chain Length:122
Number of Molecules:1
Biological Source:Pseudomonas fluorescens
Ligand Molecules
Primary Citation
The crystal structure of the CopC protein from Pseudomonas fluorescens reveals amended classifications for the CopC protein family.
J. Inorg. Biochem. 195 194 200 (2019)
PMID: 30981030 DOI: 10.1016/j.jinorgbio.2019.03.007

Abstact

The bacterial CopC family of proteins are periplasmic copper binding proteins that act in copper detoxification. These proteins contain Cu(I) and/or Cu(II) binding sites, with the family that binds Cu(II) only the most prevalent, based on sequence analyses. Here we present three crystal structures of the CopC protein from Pseudomonas fluorescens (Pf-CopC) that include the wild type protein bound to Cu(II) and two variant proteins, where Cu(II) coordinating ligands were mutated, in Cu-free states. We show that the Cu(II) atom in Pf-CopC is coordinated by two His residues, an Asp residue and the N-terminus of the protein (therefore a 3N + O site). This coordination structure is consistent with all structurally characterized proteins from the CopC family to date. Structural and sequence analyses of the CopC family allow a relationship between protein sequence and the Cu(II) binding affinity of these proteins to be proposed.

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Primary Citation of related structures