ISDA: 6NFM

Deposition Date 2018-12-20

Release Date 2019-12-25

Last Version Date 2024-10-23

Entry Detail

PDB ID:

6NFM

Keywords:

HYDROLASE

Title:

Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.53 Å

R-Value Free:

0.27

R-Value Work:

0.21

R-Value Observed:

0.22

Space Group:

P 41 21 2

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA dC->dU-editing enzyme APOBEC-3B
Gene (Uniprot):APOBEC3B
Mutagens:F200S, W228S, L230K, Y250S, F308K, Y315D, D316Q, P317G, L318R, Y319C, K320Q
Chain IDs:A
Chain Length:193
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9UH17 Pfam ID:PF05240 EC:3.5.4.38

Ligand Molecules

Primary Citation

Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B

Shi, K, Demir, O, Carpenter, M.A, Banerjee, S, Harki, D.A, Amaro, R.E, Harris, R.S, Aihara, H.Show

Faseb Bioadv 2 49 58 (2020)

DOI: 10.1096/fba.2019-00068

Primary Citation of related structures

Feedback Form