6NFK image
Deposition Date 2018-12-20
Release Date 2019-12-25
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6NFK
Keywords:
HYDROLASE
Title:
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G bound to iodide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.86 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 41 21 2
6NFK validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA dC->dU-editing enzyme APOBEC-3B
Gene (Uniprot):APOBEC3B
Mutagens:F200S, W228S, L230K, A242S, Y250S, E255Q, F308K, Y315D, D316Q, P317G, L318R, Y319C, K320Q
Chain IDs:A
Chain Length:193
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9HC16,Q9UH17 Pfam ID:PF05240 EC:3.5.4.38
Ligand Molecules
EDO
IOD
Primary Citation
Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B
Faseb Bioadv 2 49 58 (2020)
DOI: 10.1096/fba.2019-00068
Primary Citation of related structures
6NFK
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