6NF5 image
Deposition Date 2018-12-18
Release Date 2019-11-06
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6NF5
Title:
BG505 MD64 N332-GT5 SOSIP trimer in complex with BG18-like precursor HMP1 fragmentantigen binding and base-binding RM20A3 fragment antigen binding
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.71 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120
Chain IDs:A, G (auth: C), M (auth: J)
Chain Length:481
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41
Chain IDs:B, H (auth: D), N (auth: M)
Chain Length:162
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:BG18-like precursor HMP1 fragment antigen binding heavy chain
Chain IDs:C (auth: H), I (auth: E), O
Chain Length:131
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:base-binding RM20A3 fragment antigen binding heavy chain
Chain IDs:E (auth: K), K (auth: G), Q
Chain Length:125
Number of Molecules:3
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:BG18-like precursor HMP1 fragment antigen binding light chain
Chain IDs:D (auth: L), J (auth: F), P
Chain Length:106
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:base-binding RM20A3 fragment antigen binding light chain
Chain IDs:F (auth: N), L (auth: I), R
Chain Length:128
Number of Molecules:3
Biological Source:Macaca mulatta
Ligand Molecules
Primary Citation

Abstact

Vaccine induction of broadly neutralizing antibodies (bnAbs) to HIV remains a major challenge. Germline-targeting immunogens hold promise for initiating the induction of certain bnAb classes; yet for most bnAbs, a strong dependence on antibody heavy chain complementarity-determining region 3 (HCDR3) is a major barrier. Exploiting ultradeep human antibody sequencing data, we identified a diverse set of potential antibody precursors for a bnAb with dominant HCDR3 contacts. We then developed HIV envelope trimer-based immunogens that primed responses from rare bnAb-precursor B cells in a mouse model and bound a range of potential bnAb-precursor human naïve B cells in ex vivo screens. Our repertoire-guided germline-targeting approach provides a framework for priming the induction of many HIV bnAbs and could be applied to most HCDR3-dominant antibodies from other pathogens.

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Protein

Chemical

Disease

Primary Citation of related structures
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