6NDT image
Deposition Date 2018-12-14
Release Date 2019-08-14
Last Version Date 2025-04-02
Entry Detail
PDB ID:
6NDT
Keywords:
Title:
Dehydroalanine intermediate of the FlgE D2 domain
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.42 Å
R-Value Free:
0.18
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Flagellar hook protein FlgE
Gene (Uniprot):flgE
Chain IDs:A (auth: B)
Chain Length:178
Number of Molecules:1
Biological Source:Treponema denticola
Primary Citation
Structure and chemistry of lysinoalanine crosslinking in the spirochaete flagella hook.
Nat.Chem.Biol. 15 959 965 (2019)
PMID: 31406373 DOI: 10.1038/s41589-019-0341-3

Abstact

The flagellar hook protein FlgE from spirochaete bacteria self-catalyzes the formation of an unusual inter-subunit lysinoalanine (Lal) crosslink that is critical for cell motility. Unlike other known examples of Lal biosynthesis, conserved cysteine and lysine residues in FlgE spontaneously react to form Lal without the involvement of additional enzymes. Oligomerization of FlgE via its D0 and Dc domains drives assembly of the crosslinking site at the D1-D2 domain interface. Structures of the FlgED2 domain, dehydroalanine (DHA) intermediate and Lal crosslinked FlgE subunits reveal successive snapshots of the reaction. Cys178 flips from a buried configuration to release hydrogen sulfide (H2S/HS-) and produce DHA. Interface residues provide hydrogen bonds to anchor the active site, facilitate β-elimination of Cys178 and polarize the peptide backbone to activate DHA for reaction with Lys165. Cysteine-reactive molecules accelerate DHA formation, whereas nucleophiles can intercept the DHA intermediate, thereby indicating a potential for Lal crosslink inhibitors to combat spirochaetal diseases.

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Primary Citation of related structures