6NDD image
Deposition Date 2018-12-13
Release Date 2018-12-26
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6NDD
Keywords:
CELL ADHESION/TOXIN
Title:
RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN WITH MANGANESE BOUND
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Calloselasma rhodostoma (Taxon ID: 8717)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.05 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 41
6NDD validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Snaclec rhodocetin subunit gamma
Chain IDs:A, D, G, J, M, P
Chain Length:135
Number of Molecules:6
Biological Source:Calloselasma rhodostoma
UniProt ID:D2YW39 Pfam ID:PF00059
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Snaclec rhodocetin subunit delta
Chain IDs:B, E, H, K, N, Q
Chain Length:124
Number of Molecules:6
Biological Source:Calloselasma rhodostoma
UniProt ID:D2YW40 Pfam ID:PF00059
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrin alpha-2
Gene (Uniprot):ITGA2
Chain IDs:C, F, I, L, O, R
Chain Length:217
Number of Molecules:6
Biological Source:Homo sapiens
UniProt ID:P17301 Pfam ID:PF00092
Ligand Molecules
CL
MN
NA
NH4
SO4
Primary Citation
RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN WITH MANGANESE BOUND
To be published ? ? ? (?)
Primary Citation of related structures
6NDD