6NAE image
Deposition Date 2018-12-05
Release Date 2019-12-11
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6NAE
Keywords:
Title:
Crystal Structure of Ebola zaire GP protein with bound ARN0074898
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
H 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein,Envelope glycoprotein,Envelope glycoprotein
Gene (Uniprot):GP
Mutagens:T42A
Chain IDs:A
Chain Length:330
Number of Molecules:1
Biological Source:Zaire ebolavirus (strain Mayinga-76)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein
Gene (Uniprot):GP
Mutagens:H613A
Chain IDs:B
Chain Length:168
Number of Molecules:1
Biological Source:Zaire ebolavirus (strain Mayinga-76)
Primary Citation
Discovery of Adamantane Carboxamides as Ebola Virus Cell Entry and Glycoprotein Inhibitors.
Acs Med.Chem.Lett. 11 1160 1167 (2020)
PMID: 32550996 DOI: 10.1021/acsmedchemlett.0c00025

Abstact

We identified and explored the structure-activity-relationship (SAR) of an adamantane carboxamide chemical series of Ebola virus (EBOV) inhibitors. Selected analogs exhibited half-maximal inhibitory concentrations (EC50 values) of ∼10-15 nM in vesicular stomatitis virus (VSV) pseudotyped EBOV (pEBOV) infectivity assays, low hundred nanomolar EC50 activity against wild type EBOV, aqueous solubility >20 mg/mL, and attractive metabolic stability in human and nonhuman liver microsomes. X-ray cocrystallographic characterizations of a lead compound with the EBOV glycoprotein (GP) established the EBOV GP as a target for direct compound inhibitory activity and further provided relevant structural models that may assist in identifying optimized therapeutic candidates.

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Primary Citation of related structures
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