6N8D image
Entry Detail
PDB ID:
6N8D
Keywords:
Title:
Crystal structure of GII.4 2002 norovirus P domain in complex with neutralizing human antibody A1431
Biological Source:
PDB Version:
Deposition Date:
2018-11-29
Release Date:
2019-06-19
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Major capsid protein
Chain IDs:A (auth: C), D (auth: A)
Chain Length:309
Number of Molecules:2
Biological Source:Norovirus Hu/GII.4/Farmington Hills/2004/USA
Polymer Type:polypeptide(L)
Description:A1431 Fab light chain
Chain IDs:B (auth: E), E (auth: B)
Chain Length:215
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:A1431 Fab heavy chain
Chain IDs:C (auth: F), F (auth: D)
Chain Length:238
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Sera Antibody Repertoire Analyses Reveal Mechanisms of Broad and Pandemic Strain Neutralizing Responses after Human Norovirus Vaccination.
Immunity 50 1530 1541.e8 (2019)
PMID: 31216462 DOI: 10.1016/j.immuni.2019.05.007

Abstact

Rapidly evolving RNA viruses, such as the GII.4 strain of human norovirus (HuNoV), and their vaccines elicit complex serological responses associated with previous exposure. Specific correlates of protection, moreover, remain poorly understood. Here, we report the GII.4-serological antibody repertoire-pre- and post-vaccination-and select several antibody clonotypes for epitope and structural analysis. The humoral response was dominated by GII.4-specific antibodies that blocked ancestral strains or by antibodies that bound to divergent genotypes and did not block viral-entry-ligand interactions. However, one antibody, A1431, showed broad blockade toward tested GII.4 strains and neutralized the pandemic GII.P16-GII.4 Sydney strain. Structural mapping revealed conserved epitopes, which were occluded on the virion or partially exposed, allowing for broad blockade with neutralizing activity. Overall, our results provide high-resolution molecular information on humoral immune responses after HuNoV vaccination and demonstrate that infection-derived and vaccine-elicited antibodies can exhibit broad blockade and neutralization against this prevalent human pathogen.

Legend

Protein

Chemical

Disease

Primary Citation of related structures