6N8A image
Entry Detail
PDB ID:
6N8A
Keywords:
Title:
Crystal structure of selenomethionine-containing AcaB from uropathogenic E. coli
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-11-28
Release Date:
2020-07-15
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
I 21 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:transcription regulator AcaB
Chain IDs:A, B
Chain Length:194
Number of Molecules:2
Biological Source:Escherichia coli
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaB.
Nat Microbiol 5 1340 1348 (2020)
PMID: 32807890 DOI: 10.1038/s41564-020-0775-0

Abstact

The IncC family of broad-host-range plasmids enables the spread of antibiotic resistance genes among human enteric pathogens1-3. Although aspects of IncC plasmid conjugation have been well studied4-9, many roles of conjugation genes have been assigned based solely on sequence similarity. We applied hypersaturated transposon mutagenesis and transposon-directed insertion-site sequencing to determine the set of genes required for IncC conjugation. We identified 27 conjugation genes, comprising 19 that were previously identified (including two regulatory genes, acaDC) and eight not previously associated with conjugation. We show that one previously unknown gene, acaB, encodes a transcriptional regulator that has a crucial role in the regulation of IncC conjugation. AcaB binds upstream of the acaDC promoter to increase acaDC transcription; in turn, AcaDC activates the transcription of IncC conjugation genes. We solved the crystal structure of AcaB at 2.9-Å resolution and used this to guide functional analyses that reveal how AcaB binds to DNA. This improved understanding of IncC conjugation provides a basis for the development of new approaches to reduce the spread of these multi-drug-resistance plasmids.

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