6N80 image
Deposition Date 2018-11-28
Release Date 2019-06-26
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6N80
Keywords:
Title:
S. aureus ClpP bound to anti-4a
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.96 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP-dependent Clp protease proteolytic subunit
Gene (Uniprot):clpP
Chain IDs:A, B, C, D, E, F, G, H (auth: I), I (auth: K), J (auth: L), K (auth: M), L (auth: N), M (auth: S), N (auth: T)
Chain Length:203
Number of Molecules:14
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Ligand Molecules
Primary Citation
De Novo Design of Boron-Based Peptidomimetics as Potent Inhibitors of Human ClpP in the Presence of Human ClpX.
J.Med.Chem. 62 6377 6390 (2019)
PMID: 31187989 DOI: 10.1021/acs.jmedchem.9b00878

Abstact

Boronic acids have attracted the attention of synthetic and medicinal chemists due to boron's ability to modulate enzyme function. Recently, we demonstrated that boron-containing amphoteric building blocks facilitate the discovery of bioactive aminoboronic acids. Herein, we have augmented this capability with a de novo library design and a virtual screening platform modified for covalent ligands. This technique has allowed us to rapidly design and identify a series of α-aminoboronic acids as the first inhibitors of human ClpXP, which is responsible for the degradation of misfolded proteins.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
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