6N7J image
Entry Detail
PDB ID:
6N7J
Title:
BDBV223 Fab bound to synthetic peptide of Bundibugyo virus Glycoprotein Stalk
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2018-11-27
Release Date:
2019-03-20
Method Details:
Experimental Method:
Resolution:
3.68 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:BDBV223 antibody heavy chain
Chain IDs:A, B (auth: H)
Chain Length:230
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:BDBV223 antibody light chain
Chain IDs:C (auth: B), D (auth: L)
Chain Length:215
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein
Chain IDs:E (auth: C), F (auth: D)
Chain Length:16
Number of Molecules:2
Biological Source:Bundibugyo ebolavirus
Ligand Molecules
Primary Citation
Cross-reactive neutralizing human survivor monoclonal antibody BDBV223 targets the ebolavirus stalk.
Nat Commun 10 1788 1788 (2019)
PMID: 30996276 DOI: 10.1038/s41467-019-09732-7

Abstact

Three Ebolavirus genus viruses cause lethal disease and lack targeted therapeutics: Ebola virus, Sudan virus and Bundibugyo virus. Monoclonal antibody (mAb) cocktails against the surface glycoprotein (GP) present a potential therapeutic strategy. Here we report two crystal structures of the antibody BDBV223, alone and complexed with its GP2 stalk epitope, an interesting site for therapeutic/vaccine design due to its high sequence conservation among ebolaviruses. BDBV223, identified in a human survivor of Bundibugyo virus disease, neutralizes both Bundibugyo virus and Ebola virus, but not Sudan virus. Importantly, the structure suggests that BDBV223 binding interferes with both the trimeric bundle assembly of GP and the viral membrane by stabilizing a conformation in which the monomers are separated by GP lifting or bending. Targeted mutagenesis of BDBV223 to enhance SUDV GP recognition indicates that additional determinants of antibody binding likely lie outside the visualized interactions, and perhaps involve quaternary assembly or membrane-interacting regions.

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Primary Citation of related structures